#Clc main workbench tutorial how to#

The software covered in the workshop operates through a user-friendly, point-and-click graphical user interface, so neither programming experience nor familiarity with the command-line interface is required.

visualize data by generating PCA and heatmapsĮxperimental biologists seeking to analyze bulk RNA-Seq data generated through experiments or retrieved from a repository such as GEO.

perform differential expression analysis.

estimate known gene and transcript expression.

import RNA-Seq FASTQ reads from a GEO dataset.

access the CLCbio Genomics Server hosted on the HTC Cluster by Pitt CRC.

Additionally, it provides contig reports, read mapping, SNP. analyses of CLC Genomics Workbench require that the data is saved in the.

Tutorials about the Qiagen products and applications such as Biomedical Genomics Workbench, CLC Genomics Workbench, HGMD Professional, IPA, QCI-IT, and more. Library staff are still ready to assist you with your information needs. Its functionality includes de novo assembly of Sanger, 454, Illumina Genome Analyzer and SOLiD data and also de novo assembly from a combination of these platforms. This tutorial will take you through the most basic steps of working with the. The NIH Library physical space is currently closed.

#Clc main workbench tutorial how to#

During the class, you will learn how to solve the exercise problems. CLC Main Workbench creates a software environment enabling users to make a large number of advanced DNA, RNA, and protein sequence analyses, combined with gene expression analysis, smooth data management, and excellent graphical viewing and output options. CLC Genomics Workbench is software for analyzing and visualizing next generation sequencing data. Upon registration, you will receive links to workshop materials ( PowerPoint slides, lecture videos, and practice exercises) that you can view on your schedule. The functionalities of CLC Main Workbench are used for DNA, RNA, and protein sequence data analysis, such as gene expression analysis, primer design, molecular cloning. The data analysis shown is of sequenced data generated by Sanger sequencing. This is a flipped class covering bulk RNA-Seq data analysis using CLC Genomics Workbench software. The CLC Main Work bench is software package that supports analysis of your sequence data.